feat: Add superkmer CLI subcommand to obikmer2

Introduces a new `superkmer` command that implements a multi-stage pipeline for reading nucleotide pages and constructing superkmers with configurable parameters. The implementation uses partition-aware scatter writing via `obifastwrite` to distribute output batches across workers, and adds the necessary local dependencies to the project manifest.
2026-08-22 14:08:40 +02:00
parent 7183e3adb4
commit 1261aeba86
5 changed files with 80 additions and 0 deletions
@@ -1654,12 +1654,14 @@ name = "obikmer2"
 version = "1.2.2"
 dependencies = [
 "clap",
+ "obifastwrite",
 "obikalgorithm",
 "obikindex",
 "obikindexer",
 "obikseq",
 "obipipeline",
 "obiread",
+ "obiskbuilder",
 "obisys",
 "tracing",
 "tracing-subscriber",