feat: Add superkmer CLI subcommand to obikmer2

Introduces a new `superkmer` command that implements a multi-stage pipeline for reading nucleotide pages and constructing superkmers with configurable parameters. The implementation uses partition-aware scatter writing via `obifastwrite` to distribute output batches across workers, and adds the necessary local dependencies to the project manifest.
2026-08-22 14:08:40 +02:00
parent 7183e3adb4
commit 1261aeba86
5 changed files with 80 additions and 0 deletions
@@ -15,6 +15,8 @@ obisys        = { path = "../obisys" }
 obikindex     = { path = "../obikindex", default-features = false }
 obikindexer   = { path = "../obikindexer" }
 obikalgorithm = { path = "../obikalgorithm" }
+obifastwrite  = { path = "../obifastwrite" }
+obiskbuilder  = { path = "../obiskbuilder" }
 clap          = { version = "4", features = ["derive"] }
 tracing       = "0.1.44"
 tracing-subscriber = { version = "0.3", features = ["fmt", "env-filter"] }