OBIKmers/obikmer
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases 34 Wiki Activity

refactor: extract partition iteration and unify group selection

Browse Source 
Move partition iteration logic to obikdump, introducing a FilteredPartitionIter trait over IndexCache for batch-oriented scanning with configurable data retrieval and early termination. Consolidate ingroup and outgroup index storage in GroupQuorumFilter into a unified Selection struct driven by predicate matching. Update dependency manifests to include obikidxcache, rayon, and obikentropy, and remove the deprecated dump_layer module while adjusting public API re-exports.
This commit is contained in:
Eric Coissac
2026-08-26 09:33:37 +02:00
parent 881b1532b5
commit 16ade823d6
10 changed files with 256 additions and 291 deletions
Download Patch File Download Diff File Expand all files Collapse all files
src/obikdump/Cargo.toml
+5 -2
View File
@@ -4,5 +4,8 @@ version = "0.1.0"
edition = "2024"
[dependencies]
obikindex = { path = "../obikindex" }
obikfilter = { path = "../obikfilter" }
obikindex = { path = "../obikindex" }
obikfilter = { path = "../obikfilter" }
obikidxcache = { path = "../obikidxcache" }
obikseq = { path = "../obikseq" }
rayon = "1"