refactor: extract partition iteration and unify group selection

Move partition iteration logic to obikdump, introducing a FilteredPartitionIter trait over IndexCache for batch-oriented scanning with configurable data retrieval and early termination. Consolidate ingroup and outgroup index storage in GroupQuorumFilter into a unified Selection struct driven by predicate matching. Update dependency manifests to include obikidxcache, rayon, and obikentropy, and remove the deprecated dump_layer module while adjusting public API re-exports.
2026-08-26 09:33:37 +02:00
parent 881b1532b5
commit 16ade823d6
10 changed files with 256 additions and 291 deletions
@@ -9,3 +9,4 @@ obicompactvec = { path = "../obicompactvec" }
 obikseq       = { path = "../obikseq" }
 obiskio       = { path = "../obiskio" }
 obitaxonomy   = { path = "../obitaxonomy" }
+obikentropy   = { path = "../obikentropy" }