Introduce compare_sparse CLI tool to verify index consistency

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Adds a new binary that validates bit-level consistency between dense and sparse K-mer index representations by sampling slots across partitions and reporting discrepancies. Refactors sibling cache matrix initialization into a centralized factory method to simplify control flow and standardize error handling. Introduces diagnostic configurations, benchmark scripts, and an ignored test case to support k-mer resolution analysis.

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Eric Coissac committed 2026-08-17 11:16:42 +02:00

1 parent 128db64564

commit 1f9c6388eb

14 files changed

+776 -26

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