Introduce compare_sparse CLI tool to verify index consistency

Adds a new binary that validates bit-level consistency between dense and sparse K-mer index representations by sampling slots across partitions and reporting discrepancies. Refactors sibling cache matrix initialization into a centralized factory method to simplify control flow and standardize error handling. Introduces diagnostic configurations, benchmark scripts, and an ignored test case to support k-mer resolution analysis.
2026-08-17 11:16:42 +02:00
parent 128db64564
commit 1f9c6388eb
14 changed files with 776 additions and 26 deletions
@@ -493,6 +493,16 @@ dependencies = [
 "impl-tools",
 ]

+[[package]]
+name = "compare_sparse"
+version = "0.1.0"
+dependencies = [
+ "anyhow",
+ "fastrand",
+ "obicompactvec",
+ "obikindex",
+]
+
 [[package]]
 name = "console"
 version = "0.15.11"