Introduce compare_sparse CLI tool to verify index consistency

Adds a new binary that validates bit-level consistency between dense and sparse K-mer index representations by sampling slots across partitions and reporting discrepancies. Refactors sibling cache matrix initialization into a centralized factory method to simplify control flow and standardize error handling. Introduces diagnostic configurations, benchmark scripts, and an ignored test case to support k-mer resolution analysis.
2026-08-17 11:16:42 +02:00
parent 128db64564
commit 1f9c6388eb
14 changed files with 776 additions and 26 deletions
@@ -0,0 +1,14 @@
+[package]
+name = "compare_sparse"
+version = "0.1.0"
+edition = "2021"
+
+[[bin]]
+name = "compare_sparse"
+path = "src/main.rs"
+
+[dependencies]
+obikindex = { path = "../obikindex" }
+obicompactvec = { path = "../obicompactvec" }
+anyhow = "1"
+fastrand = "2"