Rename Layer to KmerLayer across obikindex and obikphylo

This commit renames the `Layer` type to `KmerLayer` throughout the `obikindex` and `obikphylo` crates. All imports, struct fields, function signatures, pattern matches, and instantiation calls have been updated accordingly. The change is a purely structural refactor that tightens type constraints without altering runtime behavior or data models.

src/obikindex/src/layer/content_layer.rs

@@ -39,7 +39,7 @@ use crate::layer::typed_layer::{COUNTS_DIR, LayerContent, PRESENCE_DIR, TypedLay
 /// (`Count`/`Presence`) exist so far; states in between (unitigs written,
 /// MPHF built, evidence built, matrix not yet built) are not represented
 /// yet.
-pub enum Layer {
+pub enum KmerLayer {
     /// Just a directory — nothing built yet. Every method below other than
     /// the path accessors panics on this variant: calling them means the
     /// caller assumed a layer was ready when it wasn't, an implementation
@@ -51,13 +51,13 @@ pub enum Layer {
     Presence(TypedLayer<PersistentBitMatrix>),
 }
 
-impl Layer {
+impl KmerLayer {
     /// An empty shell at `dir` — creates the directory (if it doesn't
     /// already exist) but nothing inside it. The starting state for
     /// building a new layer.
     pub fn create(dir: &Path) -> std::io::Result<Self> {
         std::fs::create_dir_all(dir)?;
-        Ok(Layer::Empty {
+        Ok(KmerLayer::Empty {
             dir: dir.to_owned(),
         })
     }
@@ -73,9 +73,9 @@ impl Layer {
     pub fn open(layer_dir: &Path, mode: &IndexMode, with_counts: bool) -> OLMResult<Self> {
         if with_counts && layer_dir.join(COUNTS_DIR).exists() {
             return TypedLayer::<PersistentCompactIntMatrix>::open(layer_dir, mode)
-                .map(Layer::Count);
+                .map(KmerLayer::Count);
         }
-        TypedLayer::<PersistentBitMatrix>::open(layer_dir, mode).map(Layer::Presence)
+        TypedLayer::<PersistentBitMatrix>::open(layer_dir, mode).map(KmerLayer::Presence)
     }
 
     // ── Paths — only meaningful before anything is built ───────────────
@@ -93,7 +93,7 @@ impl Layer {
     /// again here would mean it lost track of its own state.
     pub fn dir(&self) -> &Path {
         match self {
-            Layer::Empty { dir } => dir,
+            KmerLayer::Empty { dir } => dir,
             _ => panic!("Layer::dir() only available on Empty — caller already has this path"),
         }
     }
@@ -121,33 +121,33 @@ impl Layer {
 
     pub fn content(&self) -> LayerContent {
         match self {
-            Layer::Count(_) => LayerContent::Count,
+            KmerLayer::Count(_) => LayerContent::Count,
-            Layer::Presence(_) => LayerContent::Presence,
+            KmerLayer::Presence(_) => LayerContent::Presence,
-            Layer::Empty { .. } => panic!("Layer::content() called on an Empty layer"),
+            KmerLayer::Empty { .. } => panic!("Layer::content() called on an Empty layer"),
         }
     }
 
     pub fn evidence_kind(&self) -> EvidenceKind {
         match self {
-            Layer::Count(l) => l.evidence_kind(),
+            KmerLayer::Count(l) => l.evidence_kind(),
-            Layer::Presence(l) => l.evidence_kind(),
+            KmerLayer::Presence(l) => l.evidence_kind(),
-            Layer::Empty { .. } => panic!("Layer::evidence_kind() called on an Empty layer"),
+            KmerLayer::Empty { .. } => panic!("Layer::evidence_kind() called on an Empty layer"),
         }
     }
 
     pub fn n(&self) -> usize {
         match self {
-            Layer::Count(l) => l.n(),
+            KmerLayer::Count(l) => l.n(),
-            Layer::Presence(l) => l.n(),
+            KmerLayer::Presence(l) => l.n(),
-            Layer::Empty { .. } => panic!("Layer::n() called on an Empty layer"),
+            KmerLayer::Empty { .. } => panic!("Layer::n() called on an Empty layer"),
         }
     }
 
     pub fn find_slot(&self, kmer: CanonicalKmer) -> Option<usize> {
         match self {
-            Layer::Count(l) => l.find_slot(kmer),
+            KmerLayer::Count(l) => l.find_slot(kmer),
-            Layer::Presence(l) => l.find_slot(kmer),
+            KmerLayer::Presence(l) => l.find_slot(kmer),
-            Layer::Empty { .. } => panic!("Layer::find_slot() called on an Empty layer"),
+            KmerLayer::Empty { .. } => panic!("Layer::find_slot() called on an Empty layer"),
         }
     }
 
@@ -156,17 +156,17 @@ impl Layer {
     /// the evidence check `find_slot`/`find` would perform is redundant.
     pub fn hash_batch(&self, kmers: &[CanonicalKmer]) -> Vec<usize> {
         match self {
-            Layer::Count(l) => l.hash_batch(kmers),
+            KmerLayer::Count(l) => l.hash_batch(kmers),
-            Layer::Presence(l) => l.hash_batch(kmers),
+            KmerLayer::Presence(l) => l.hash_batch(kmers),
-            Layer::Empty { .. } => panic!("Layer::hash_batch() called on an Empty layer"),
+            KmerLayer::Empty { .. } => panic!("Layer::hash_batch() called on an Empty layer"),
         }
     }
 
     pub fn n_cols(&self) -> usize {
         match self {
-            Layer::Count(l) => l.n_cols(),
+            KmerLayer::Count(l) => l.n_cols(),
-            Layer::Presence(l) => l.n_cols(),
+            KmerLayer::Presence(l) => l.n_cols(),
-            Layer::Empty { .. } => panic!("Layer::n_cols() called on an Empty layer"),
+            KmerLayer::Empty { .. } => panic!("Layer::n_cols() called on an Empty layer"),
         }
     }
 
@@ -178,8 +178,8 @@ impl Layer {
     /// presence (`!= 0`) in place.
     pub fn fill_sub_matrix_carries(&self, slots: &[usize], out: &mut [Vec<bool>]) {
         match self {
-            Layer::Presence(l) => l.fill_sub_matrix(slots, out),
+            KmerLayer::Presence(l) => l.fill_sub_matrix(slots, out),
-            Layer::Count(l) => {
+            KmerLayer::Count(l) => {
                 let mut counts: Vec<Vec<u32>> = out.iter().map(|_| Vec::new()).collect();
                 l.fill_sub_matrix(slots, &mut counts);
                 for (o, c) in out.iter_mut().zip(counts.iter()) {
@@ -187,7 +187,7 @@ impl Layer {
                     o.extend(c.iter().map(|&v| v != 0));
                 }
             }
-            Layer::Empty { .. } => {
+            KmerLayer::Empty { .. } => {
                 panic!("Layer::fill_sub_matrix_carries() called on an Empty layer")
             }
         }
@@ -196,18 +196,18 @@ impl Layer {
     /// Raw MPHF lookup: kmer → slot, no membership check.
     pub fn hash(&self, kmer: CanonicalKmer) -> usize {
         match self {
-            Layer::Count(l) => l.hash(kmer),
+            KmerLayer::Count(l) => l.hash(kmer),
-            Layer::Presence(l) => l.hash(kmer),
+            KmerLayer::Presence(l) => l.hash(kmer),
-            Layer::Empty { .. } => panic!("Layer::hash() called on an Empty layer"),
+            KmerLayer::Empty { .. } => panic!("Layer::hash() called on an Empty layer"),
         }
     }
 
     /// Iterate over all canonical kmers in the layer, in deterministic order.
     pub fn iter_kmers(&self) -> crate::layer::mphf_layer::KmerIter {
         match self {
-            Layer::Count(l) => l.iter_kmers(),
+            KmerLayer::Count(l) => l.iter_kmers(),
-            Layer::Presence(l) => l.iter_kmers(),
+            KmerLayer::Presence(l) => l.iter_kmers(),
-            Layer::Empty { .. } => panic!("Layer::iter_kmers() called on an Empty layer"),
+            KmerLayer::Empty { .. } => panic!("Layer::iter_kmers() called on an Empty layer"),
         }
     }
 
@@ -215,18 +215,18 @@ impl Layer {
     /// sequence index in `unitigs.bin`.
     pub fn enumerate_kmers(&self) -> std::iter::Enumerate<crate::layer::mphf_layer::KmerIter> {
         match self {
-            Layer::Count(l) => l.enumerate_kmers(),
+            KmerLayer::Count(l) => l.enumerate_kmers(),
-            Layer::Presence(l) => l.enumerate_kmers(),
+            KmerLayer::Presence(l) => l.enumerate_kmers(),
-            Layer::Empty { .. } => panic!("Layer::enumerate_kmers() called on an Empty layer"),
+            KmerLayer::Empty { .. } => panic!("Layer::enumerate_kmers() called on an Empty layer"),
         }
     }
 
     /// Iterate over the layer's canonical kmers in batches of `n`.
     pub fn iter_kmers_batch(&self, n: usize) -> crate::layer::mphf_layer::KmerBatchIter {
         match self {
-            Layer::Count(l) => l.iter_kmers_batch(n),
+            KmerLayer::Count(l) => l.iter_kmers_batch(n),
-            Layer::Presence(l) => l.iter_kmers_batch(n),
+            KmerLayer::Presence(l) => l.iter_kmers_batch(n),
-            Layer::Empty { .. } => panic!("Layer::iter_kmers_batch() called on an Empty layer"),
+            KmerLayer::Empty { .. } => panic!("Layer::iter_kmers_batch() called on an Empty layer"),
         }
     }
 
@@ -237,9 +237,9 @@ impl Layer {
         n: usize,
     ) -> Box<dyn Iterator<Item = (usize, Vec<CanonicalKmer>)> + Send + 'static> {
         match self {
-            Layer::Count(l) => Box::new(l.enumerate_kmers_batch(n)),
+            KmerLayer::Count(l) => Box::new(l.enumerate_kmers_batch(n)),
-            Layer::Presence(l) => Box::new(l.enumerate_kmers_batch(n)),
+            KmerLayer::Presence(l) => Box::new(l.enumerate_kmers_batch(n)),
-            Layer::Empty { .. } => {
+            KmerLayer::Empty { .. } => {
                 panic!("Layer::enumerate_kmers_batch() called on an Empty layer")
             }
         }

src/obikindex/src/layer/mod.rs

@@ -2,19 +2,19 @@ pub mod content_layer;
 pub mod error;
 pub mod evidence;
 pub mod fingerprint;
-pub mod typed_layer;
 pub mod layered_store;
 pub mod map;
 pub mod meta;
 pub(crate) mod mphf_layer;
+pub mod typed_layer;
 
-pub use content_layer::Layer;
+pub use content_layer::KmerLayer;
 pub use error::{OLMError, OLMResult};
-pub use typed_layer::{
-    dereplicated_superkmers_path, layer_dir, open_data, raw_superkmers_path, HasLayerContent,
-    HasStorageKind, Hit, LayerContent, LayerData, TypedLayer,
-};
 pub use layered_store::LayeredStore;
 pub use map::LayeredMap;
 pub use meta::{IndexMode, PartitionMeta};
 pub use mphf_layer::{EvidenceKind, KmerBatchIter, KmerIter, MphfLayer, MphfOnly};
+pub use typed_layer::{
+    HasLayerContent, HasStorageKind, Hit, LayerContent, LayerData, TypedLayer,
+    dereplicated_superkmers_path, layer_dir, open_data, raw_superkmers_path,
+};

src/obikindex/src/partition/mod.rs

@@ -21,8 +21,8 @@
 
 use std::path::{Path, PathBuf};
 
+use crate::layer::{IndexMode, KmerLayer, OLMResult, layer_dir};
 use obikseq::CanonicalKmer;
-use crate::layer::{layer_dir, IndexMode, Layer, OLMResult};
 
 /// Partition subdirectory name, under an index's root — the single source
 /// of truth for the on-disk `partitions/part_NNNNN` naming convention.
@@ -47,7 +47,7 @@ pub fn index_dir(root: &Path, i: usize) -> PathBuf {
 
 /// One partition's open layers, in layer order (layer 0 first).
 pub struct KmerPartition {
-    layers: Vec<Layer>,
+    layers: Vec<KmerLayer>,
 }
 
 impl KmerPartition {
@@ -55,9 +55,14 @@ impl KmerPartition {
     /// `index_dir/layer_1`, ... up to `n_layers`), eagerly — not lazily on
     /// first access, so the caller pays the mmap cost once, up front,
     /// rather than at an unpredictable point during later lookups.
-    pub fn open(index_dir: &Path, mode: &IndexMode, n_layers: usize, with_counts: bool) -> OLMResult<Self> {
+    pub fn open(
+        index_dir: &Path,
+        mode: &IndexMode,
+        n_layers: usize,
+        with_counts: bool,
+    ) -> OLMResult<Self> {
         let layers = (0..n_layers)
-            .map(|l| Layer::open(&layer_dir(index_dir, l), mode, with_counts))
+            .map(|l| KmerLayer::open(&layer_dir(index_dir, l), mode, with_counts))
             .collect::<OLMResult<Vec<_>>>()?;
         Ok(Self { layers })
     }
@@ -66,11 +71,11 @@ impl KmerPartition {
         self.layers.len()
     }
 
-    pub fn layer(&self, i: usize) -> &Layer {
+    pub fn layer(&self, i: usize) -> &KmerLayer {
         &self.layers[i]
     }
 
-    pub fn layers(&self) -> &[Layer] {
+    pub fn layers(&self) -> &[KmerLayer] {
         &self.layers
     }
 

src/obikindexer/src/algorithms/partitionner/router.rs

@@ -1,12 +1,12 @@
 use std::io;
 use std::path::PathBuf;
-use std::sync::atomic::{AtomicU32, AtomicU64, Ordering};
 use std::sync::Arc;
+use std::sync::atomic::{AtomicU32, AtomicU64, Ordering};
 use std::time::Instant;
 
 use obikindex::KmerIndex;
+use obikindex::layer::KmerLayer;
 use obikseq::RoutableSuperKmer;
-use obikindex::layer::Layer;
 use obiskio::SKResult;
 use obisys::Progress;
 use tracing::info;
@@ -15,7 +15,7 @@ use niffler::Level;
 use niffler::send::compression::Format;
 use obiskio::SKFileWriter;
 
-use obipipeline::{throttle, ThrottleGuard, Throttled};
+use obipipeline::{ThrottleGuard, Throttled, throttle};
 use obiread::NucPage;
 
 // ── Pipeline plumbing, private to `run` ─────────────────────────────────────
@@ -240,13 +240,19 @@ impl<'a> PartitionRouter<'a> {
                 let now = Instant::now();
                 if now.duration_since(last_report).as_secs_f64() > REPORT_INTERVAL {
                     last_report = now;
-                    cb(Progress { position: total_bases, total: None });
+                    cb(Progress {
+                        position: total_bases,
+                        total: None,
+                    });
                 }
             }
             self.write_batch(batch)?;
         }
         if let Some(cb) = on_progress.as_mut() {
-            cb(Progress { position: total_bases, total: None });
+            cb(Progress {
+                position: total_bases,
+                total: None,
+            });
         }
         self.close()
     }
@@ -272,7 +278,7 @@ impl<'a> PartitionRouter<'a> {
     fn ensure_writer(&mut self, partition: usize) -> SKResult<&mut SKFileWriter> {
         if self.writers[partition].is_none() {
             let dir = self.layer0_dir(partition);
-            Layer::create(&dir).map_err(|e| io::Error::other(e.to_string()))?;
+            KmerLayer::create(&dir).map_err(|e| io::Error::other(e.to_string()))?;
             let file_path = obikindex::layer::raw_superkmers_path(&dir);
             let writer = SKFileWriter::create_with(file_path, Format::Zstd, self.level)?;
             self.writers[partition] = Some(writer);

src/obikphylo/src/siblings/cache.rs

@@ -1,6 +1,6 @@
 use rayon::prelude::*;
 
-use obikindex::layer::Layer;
+use obikindex::layer::KmerLayer;
 use obikseq::CanonicalKmer;
 use obisys::progress_bar;
 
@@ -31,7 +31,7 @@ use obikindex::{KmerIndex, OKIResult};
 /// `DevDocMD/implementation/partition_layer_cache.md`). Its
 /// sibling-specific extension (`iter_minorants_batch`) lives in `iter.rs`.
 pub(super) struct PartitionCache {
-    mats: Vec<Vec<Layer>>,
+    mats: Vec<Vec<KmerLayer>>,
     /// Whether every `FamilyMask` field in this index's sibling annexes can
     /// be trusted as a real layer index (`n_layers <= 7`, the same decision
     /// `build_layer_sibling_annex` makes when writing them) — computed once
@@ -47,9 +47,9 @@ pub(super) struct PartitionCache {
 impl PartitionCache {
     pub(super) fn build(index: &KmerIndex, n_parts: usize, with_counts: bool) -> OKIResult<Self> {
         let pb = progress_bar("open_partitions", n_parts as u64, "partitions");
-        let built: Vec<(Vec<Layer>, usize)> = (0..n_parts)
+        let built: Vec<(Vec<KmerLayer>, usize)> = (0..n_parts)
             .into_par_iter()
-            .map(|part| -> OKIResult<(Vec<Layer>, usize)> {
+            .map(|part| -> OKIResult<(Vec<KmerLayer>, usize)> {
                 let index_dir = index.index_dir(part);
                 if !index_dir.exists() {
                     pb.inc(1);
@@ -58,7 +58,8 @@ impl PartitionCache {
                 let meta = index.partition_meta(part)?;
                 let mut mats = Vec::with_capacity(meta.n_layers);
                 for l in 0..meta.n_layers {
-                    let Ok(mat) = Layer::open(&index.layer_dir(part, l), &meta.mode, with_counts)
+                    let Ok(mat) =
+                        KmerLayer::open(&index.layer_dir(part, l), &meta.mode, with_counts)
                     else {
                         continue;
                     };
@@ -215,7 +216,7 @@ impl PartitionCache {
 /// `hits` gets its slots (evidence-probed vs. trusted `index_batch`) — this
 /// is everything after that.
 fn resolve_layer_hits(
-    mat: &Layer,
+    mat: &KmerLayer,
     hits: &[(usize, usize, u8)],
     n_genomes: usize,
     on_hit: &mut impl FnMut(usize, u8, usize),

src/obikphylo/src/siblings/family_scan.rs

@@ -60,7 +60,7 @@ use obipipeline::{ThrottleGuard, throttle};
 use obikindex::KmerIndex;
 use obikindex::{OKIError, OKIResult};
 
-use obikindex::layer::Layer;
+use obikindex::layer::KmerLayer;
 
 use super::cache::PartitionCache;
 use super::helpers::central_base;
@@ -134,7 +134,7 @@ pub(crate) fn sibling_layer_dirs(index: &KmerIndex) -> OKIResult<Vec<PathBuf>> {
 /// `mat` (a `TypedLayer<D>`) already bundles the MPHF, and each `SiblingEntry`
 /// arrives with its kmer and mask already in hand from `iter_minorants_batch`.
 struct LayerCtx {
-    mat: Layer,
+    mat: KmerLayer,
     n_parts: usize,
     n_genomes: usize,
     n_cols: usize,
@@ -197,7 +197,7 @@ pub(super) fn scan_layer_families(
     let meta = PartitionMeta::load(index_dir).map_err(olm_to_ok)?;
     let annex = Arc::new(SiblingAnnex::open(&layer_dir.join(ANNEX_FILE_NAME))?);
 
-    let mat = Layer::open(layer_dir, &meta.mode, with_counts).map_err(olm_to_ok)?;
+    let mat = KmerLayer::open(layer_dir, &meta.mode, with_counts).map_err(olm_to_ok)?;
     let n_cols = mat.n_cols().min(n_genomes);
 
     let ctx = Arc::new(LayerCtx {

src/obikphylo/src/siblings/iter.rs

@@ -28,8 +28,8 @@
 
 use std::sync::Arc;
 
+use obikindex::layer::{KmerIter, LayerData, TypedLayer};
 use obikseq::CanonicalKmer;
-use obikindex::layer::{KmerIter, TypedLayer, LayerData};
 
 use super::{FamilyMask, SiblingAnnex};
 
@@ -151,24 +151,44 @@ pub trait SiblingLayerExt {
 
     /// Like [`iter_minorants`](Self::iter_minorants), yielding `batch_size`
     /// minorants at a time.
-    fn iter_minorants_batch(&self, annex: Arc<SiblingAnnex>, batch_size: usize) -> MinorantBatchIter;
+    fn iter_minorants_batch(
+        &self,
+        annex: Arc<SiblingAnnex>,
+        batch_size: usize,
+    ) -> MinorantBatchIter;
 }
 
 impl<D: LayerData> SiblingLayerExt for TypedLayer<D> {
     fn iter_siblings(&self, annex: Arc<SiblingAnnex>) -> SiblingIter {
-        SiblingIter { kmers: self.iter_kmers(), annex, order: 0 }
+        SiblingIter {
+            kmers: self.iter_kmers(),
+            annex,
+            order: 0,
+        }
     }
 
     fn iter_siblings_batch(&self, annex: Arc<SiblingAnnex>, batch_size: usize) -> SiblingBatchIter {
-        SiblingBatchIter { inner: self.iter_siblings(annex), batch_size }
+        SiblingBatchIter {
+            inner: self.iter_siblings(annex),
+            batch_size,
+        }
     }
 
     fn iter_minorants(&self, annex: Arc<SiblingAnnex>) -> MinorantIter {
-        MinorantIter { inner: self.iter_siblings(annex) }
+        MinorantIter {
+            inner: self.iter_siblings(annex),
+        }
     }
 
-    fn iter_minorants_batch(&self, annex: Arc<SiblingAnnex>, batch_size: usize) -> MinorantBatchIter {
+    fn iter_minorants_batch(
-        MinorantBatchIter { inner: self.iter_minorants(annex), batch_size }
+        &self,
+        annex: Arc<SiblingAnnex>,
+        batch_size: usize,
+    ) -> MinorantBatchIter {
+        MinorantBatchIter {
+            inner: self.iter_minorants(annex),
+            batch_size,
+        }
     }
 }
 
@@ -178,36 +198,48 @@ impl<D: LayerData> SiblingLayerExt for TypedLayer<D> {
 /// depend on which `D` is inside), so no boxing is needed. `obikindex::layer`
 /// itself can't implement this: "family"/"minorant" are phylo concepts, it
 /// stays kmer/slot-mapping only (see the module docs above).
-impl SiblingLayerExt for obikindex::layer::Layer {
+impl SiblingLayerExt for obikindex::layer::KmerLayer {
     fn iter_siblings(&self, annex: Arc<SiblingAnnex>) -> SiblingIter {
         match self {
-            obikindex::layer::Layer::Count(l) => l.iter_siblings(annex),
+            obikindex::layer::KmerLayer::Count(l) => l.iter_siblings(annex),
-            obikindex::layer::Layer::Presence(l) => l.iter_siblings(annex),
+            obikindex::layer::KmerLayer::Presence(l) => l.iter_siblings(annex),
-            obikindex::layer::Layer::Empty { .. } => panic!("iter_siblings() called on an Empty layer"),
+            obikindex::layer::KmerLayer::Empty { .. } => {
+                panic!("iter_siblings() called on an Empty layer")
+            }
         }
     }
 
     fn iter_siblings_batch(&self, annex: Arc<SiblingAnnex>, batch_size: usize) -> SiblingBatchIter {
         match self {
-            obikindex::layer::Layer::Count(l) => l.iter_siblings_batch(annex, batch_size),
+            obikindex::layer::KmerLayer::Count(l) => l.iter_siblings_batch(annex, batch_size),
-            obikindex::layer::Layer::Presence(l) => l.iter_siblings_batch(annex, batch_size),
+            obikindex::layer::KmerLayer::Presence(l) => l.iter_siblings_batch(annex, batch_size),
-            obikindex::layer::Layer::Empty { .. } => panic!("iter_siblings_batch() called on an Empty layer"),
+            obikindex::layer::KmerLayer::Empty { .. } => {
+                panic!("iter_siblings_batch() called on an Empty layer")
+            }
         }
     }
 
     fn iter_minorants(&self, annex: Arc<SiblingAnnex>) -> MinorantIter {
         match self {
-            obikindex::layer::Layer::Count(l) => l.iter_minorants(annex),
+            obikindex::layer::KmerLayer::Count(l) => l.iter_minorants(annex),
-            obikindex::layer::Layer::Presence(l) => l.iter_minorants(annex),
+            obikindex::layer::KmerLayer::Presence(l) => l.iter_minorants(annex),
-            obikindex::layer::Layer::Empty { .. } => panic!("iter_minorants() called on an Empty layer"),
+            obikindex::layer::KmerLayer::Empty { .. } => {
+                panic!("iter_minorants() called on an Empty layer")
+            }
         }
     }
 
-    fn iter_minorants_batch(&self, annex: Arc<SiblingAnnex>, batch_size: usize) -> MinorantBatchIter {
+    fn iter_minorants_batch(
+        &self,
+        annex: Arc<SiblingAnnex>,
+        batch_size: usize,
+    ) -> MinorantBatchIter {
         match self {
-            obikindex::layer::Layer::Count(l) => l.iter_minorants_batch(annex, batch_size),
+            obikindex::layer::KmerLayer::Count(l) => l.iter_minorants_batch(annex, batch_size),
-            obikindex::layer::Layer::Presence(l) => l.iter_minorants_batch(annex, batch_size),
+            obikindex::layer::KmerLayer::Presence(l) => l.iter_minorants_batch(annex, batch_size),
-            obikindex::layer::Layer::Empty { .. } => panic!("iter_minorants_batch() called on an Empty layer"),
+            obikindex::layer::KmerLayer::Empty { .. } => {
+                panic!("iter_minorants_batch() called on an Empty layer")
+            }
         }
     }
 }