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refactor(benchmark): consolidate generated artifacts under run/ directory
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Restructure the benchmark pipeline to direct all simulated data, indices, statistics, and query outputs into a unified `run/` directory. Update Makefile targets, shell scripts, and Python utilities to resolve paths relative to this new base. Adjust documentation and dependency tracking to match the revised layout, and remove outdated temporary artifacts.
This commit is contained in:
Eric Coissac
2026-08-29 00:19:31 +02:00
parent 54e4600120
commit 52f26809af
1057 changed files with 449 additions and 449 deletions
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@@ -30,25 +30,7 @@ data-stress
*.bin.idx
*.prsb
Betula_exilis--IGA-24-33
benchmark/genomes
benchmark/genomes_orig
benchmark/simulated_data
benchmark/specimen_index_presence
benchmark/global_index_count_dense
benchmark/global_index_presence
benchmark/global_index_presence_orig
benchmark/global_index_presence_sav
benchmark/global_index_presence_dense
benchmark/all_specific
benchmark/global_index_count
benchmark/specimen_index_count
benchmark/stats
benchmark/reference_index
benchmark/reference_dist
benchmark/obikmer_dist
benchmark/specific_index_count
benchmark/specific_index_presence
benchmark/query_data
benchmark/run/
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