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feat: add batched int group stats API and expand benchmark variants

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Introduces a `batch_int_group_stats` API for computing presence counts, sums, minimums, and maximums across sparse and dense matrix representations. The selection layer now utilizes this batched approach to optimize aggregation semantics for boolean and numeric operations. Additionally, reorganizes the benchmarking infrastructure to support querying across presence and count index variants in both dense and sparse formats, including new packing scripts and updated statistics aggregation.
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Eric Coissac
2026-08-28 23:37:16 +02:00
parent 579cfd8752
commit 54e4600120
13 changed files with 546 additions and 163 deletions
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@@ -34,12 +34,14 @@ benchmark/genomes
benchmark/genomes_orig
benchmark/simulated_data
benchmark/specimen_index_presence
benchmark/specimen_index_count
benchmark/global_index_count_dense
benchmark/global_index_presence
benchmark/global_index_presence_orig
benchmark/global_index_presence_sav
benchmark/global_index_presence_dense
benchmark/all_specific
benchmark/global_index_count
benchmark/specimen_index_count
benchmark/stats
benchmark/reference_index
benchmark/reference_dist