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Extract phylogenetic sibling logic into new obikphylo crate

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Relocate the `siblings` and `cardcomp` modules from `obikindex` to a dedicated `obikphylo` workspace member. Convert inherent methods on `KmerIndex` into extension traits, update import paths across `obikmer`, and add supporting accessor methods to `obikseq` and `obilayeredmap`. This restructuring reduces the public API surface of `obikindex` while organizing phylogenetic iteration, caching, and distance calculation logic under a dedicated crate.
This commit is contained in:
Eric Coissac
2026-08-16 14:30:34 +02:00
parent 519195d4a1
commit 5997de6707
31 changed files with 831 additions and 547 deletions
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src/obikindex/Cargo.toml
-2
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@@ -11,8 +11,6 @@ obiskio = { path = "../obiskio" }
obisys = { path = "../obisys" }
obicompactvec = { path = "../obicompactvec" }
obilayeredmap = { path = "../obilayeredmap" }
obiskbuilder = { path = "../obiskbuilder" }
obipipeline = { path = "../obipipeline" }
ndarray = "0.16"
rayon = "1"
crossbeam-channel = "0.5"