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chore: update dependencies and adapt to updated crate APIs

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Bumps core dependencies including ndarray, rand, hashbrown, niffler, ureq, sysinfo, indicatif, lru, and remove_dir_all. Adapts source code to accommodate breaking changes by migrating RNG initialization, adjusting HTTP response handling, and replacing the fs4 crate with standard library file locking. Adds a planning document for query benchmarking and sparse index regression tests.
This commit is contained in:
Eric Coissac
2026-08-20 13:45:41 +02:00
parent 32bcbd1465
commit 5a9d903e51
15 changed files with 365 additions and 511 deletions
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src/obidebruinj/Cargo.toml
+1 -1
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@@ -7,7 +7,7 @@ edition = "2021"
obikseq = { path = "../obikseq" }
obifastwrite = { path = "../obifastwrite" }
ahash = "0.8"
hashbrown = { version = "0.14", features = ["rayon"] }
hashbrown = { version = "0.17", features = ["rayon"] }
rayon = "1"
crossbeam-channel = "0.5"
xxhash-rust = { version = "0.8.15", features = ["xxh3", "const_xxh3"] }