OBIKmers/obikmer
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases 34 Wiki Activity

feat: enable index resumption and enforce directory creation

Browse Source 
The command now supports reopening existing indexes instead of failing when the output file exists. Control flow branches between opening an existing index and constructing a new one, moving configuration setup exclusively to the creation path. Directory existence is enforced upfront with proper I/O error propagation. The --force flag retains its original semantics by removing the target directory before proceeding with a fresh build.
This commit is contained in:
Eric Coissac
2026-08-21 05:06:38 +02:00
parent abc51c2add
commit 5c1584967f
161 changed files with 5274 additions and 845 deletions
Download Patch File Download Diff File Expand all files Collapse all files
DevDocMD/implementation/evidence_elimination.refs.md
+3 -3
View File
@@ -3,9 +3,9 @@
## Code couvert
- `obilayeredmap/src/fingerprint.rs` — FingerprintVec, FingerprintVecWriter, stockage b bits/slot, matches()
- `obilayeredmap/src/mphf_layer.rs` — build_approx_evidence(dir, b, z), find_approx()
- `obilayeredmap/src/meta.rs` — EvidenceKind::Approx { b, z }, LayerMeta
- `obikindex/src/layer/fingerprint.rs` — FingerprintVec, FingerprintVecWriter, stockage b bits/slot, matches()
- `obikindex/src/layer/mphf_layer.rs` — build_approx_evidence(dir, b, z), find_approx()
- `obikindex/src/layer/meta.rs` — EvidenceKind::Approx { b, z }, LayerMeta
- `obikindex/src/reindex.rs` — KmerIndex::reindex(), conversion exact↔approx en place
- `obikmer/src/cmd/reindex.rs` — CLI reindex, options --approx, -z, --evidence-bits, --fp, --block-size
- `obikmer/src/cmd/index.rs` — resolve_approx_params(), options --approx, -z, --evidence-bits, --fp