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feat: enable index resumption and enforce directory creation

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The command now supports reopening existing indexes instead of failing when the output file exists. Control flow branches between opening an existing index and constructing a new one, moving configuration setup exclusively to the creation path. Directory existence is enforced upfront with proper I/O error propagation. The --force flag retains its original semantics by removing the target directory before proceeding with a fresh build.
This commit is contained in:
Eric Coissac
2026-08-21 05:06:38 +02:00
parent abc51c2add
commit 5c1584967f
161 changed files with 5274 additions and 845 deletions
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DevDocMD/implementation/unitig_evidence.refs.md
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## Code couvert
- `obiskio/src/unitig_index.rs` — format unitigs.bin + unitigs.bin.idx, UnitigFileWriter, UnitigFileReader, build_unitig_idx(), DEFAULT_BLOCK_BITS=0, chemin chaud block_bits=0 dans chunk_start()
- `obilayeredmap/src/evidence.rs` — encodage Evidence (chunk_id 25 bits | rank 7 bits), EvidenceWriter
- `obikindex/src/layer/evidence.rs` — encodage Evidence (chunk_id 25 bits | rank 7 bits), EvidenceWriter
- `obidebruinj/src/debruijn.rs` — extraction unitigs, chunking à MAX_KMERS_PER_CHUNK
## Notes