Add obikselect crate for k-mer selection and aggregation

Introduces a new `obikselect` module to handle k-mer selection and column aggregation. Adds a `select` CLI command in `obikmer2` that supports group predicates, aggregate operators, and output column filtering. Implements operator parsing with case-insensitive matching and default rules, along with a centralized module for resolving group specifications from metadata or genome filters. Updates dependencies to include the new crate and its prerequisites.
2026-08-26 14:27:19 +02:00
parent 354e6f9bf1
commit 737966899f
9 changed files with 291 additions and 0 deletions
@@ -1671,6 +1671,7 @@ dependencies = [
 "obikindex",
 "obikindexer",
 "obikmerge",
+ "obikselect",
 "obikseq",
 "obipipeline",
 "obiread",
@@ -1758,6 +1759,7 @@ version = "0.1.0"
 dependencies = [
 "obicompactvec",
 "obikalgorithm",
+ "obikfilter",
 "obikindex",
 "obisys",
 "tracing",