Add dump subcommand and introduce reusable group filtering arguments
Introduces a new `dump` CLI command to export index k-mers as a CSV table. Adds a reusable `GroupFilterArgs` struct for ingroup/outgroup metadata-predicate quorum filtering with configurable count and fraction thresholds. Refactors the filter command to use explicit flags and a `GenomeSelector`-based pipeline, improving error handling and predicate application order. Exposes `IndexDump` from the `obikdump` crate and updates local dependencies accordingly.
This commit is contained in:
@@ -6,3 +6,5 @@
|
||||
//! reverse), same pattern as `obikindexer`/`obikquery`.
|
||||
|
||||
mod dump;
|
||||
|
||||
pub use dump::IndexDump;
|
||||
|
||||
Reference in New Issue
Block a user