OBIKmers/obikmer
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases 34 Wiki Activity

refactor: rename obikpartitionner crate to obikpartition

Browse Source 
Update Cargo manifests, dependency paths, and Rust imports across the workspace to reflect the `obikpartitionner` to `obikpartition` rename. Synchronize architecture and implementation documentation with the new module structure. Fix minor syntax issues in test assertions to ensure compilation compatibility. No behavioral or API changes are introduced.
This commit is contained in:
Eric Coissac
2026-08-20 16:41:22 +02:00
parent f9ef6b8391
commit 9379bbaad8
63 changed files with 80 additions and 80 deletions
Download Patch File Download Diff File Expand all files Collapse all files
DevDocMD/implementation/filtering.md
+2 -2
View File
@@ -303,7 +303,7 @@ This parameter has no effect on presence/absence indexes (where values are alrea
## Implementation
- **`obikpartitionner::filter::GroupQuorumFilter`** — implements `KmerFilter`
- **`obikpartition::filter::GroupQuorumFilter`** — implements `KmerFilter`
using pre-computed ingroup and outgroup index vectors. The heavy logic
(predicate parsing, three-value evaluation, genome classification) happens
once before any iteration; each k-mer row evaluation is a simple index
@@ -314,7 +314,7 @@ This parameter has no effect on presence/absence indexes (where values are alrea
`UnitigArgs`. `FilterArgs::build_filters()` returns a ready-to-use filter
list.
- **`obikpartitionner::KmerPartition::iter_partition_kmers`** — accepts
- **`obikpartition::KmerPartition::iter_partition_kmers`** — accepts
`filters: &[Box<dyn KmerFilter>]` and applies them per-kmer before invoking
the callback. `filter`, `dump`, and `unitig` all go through this single
entry point.