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refactor: rename obikpartitionner crate to obikpartition

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Update Cargo manifests, dependency paths, and Rust imports across the workspace to reflect the `obikpartitionner` to `obikpartition` rename. Synchronize architecture and implementation documentation with the new module structure. Fix minor syntax issues in test assertions to ensure compilation compatibility. No behavioral or API changes are introduced.
This commit is contained in:
Eric Coissac
2026-08-20 16:41:22 +02:00
parent f9ef6b8391
commit 9379bbaad8
63 changed files with 80 additions and 80 deletions
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DevDocMD/implementation/merge.refs.md
+2 -2
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@@ -4,8 +4,8 @@
## Code couvert
- `obikindex/src/merge.rs` — `KmerIndex::merge()`, validation de compatibilité d'évidence, `validate_evidence_compat()`
- `obikpartitionner/src/merge_layer.rs` — `merge_partition()`, construction de la nouvelle layer, paramètre `block_bits`
- `obikpartitionner/src/rebuild_layer.rs` — `rebuild_partition()`, paramètre `block_bits`
- `obikpartition/src/merge_layer.rs` — `merge_partition()`, construction de la nouvelle layer, paramètre `block_bits`
- `obikpartition/src/rebuild_layer.rs` — `rebuild_partition()`, paramètre `block_bits`
- `obilayeredmap/src/layer.rs` — `Layer::append_genome_column()` (PersistentCompactIntMatrix et PersistentBitMatrix)
- `obicompactvec/src/intmatrix.rs` — `append_column` pour PersistentCompactIntMatrix
- `obicompactvec/src/bitmatrix.rs` — `append_column` pour PersistentBitMatrix