OBIKmers/obikmer
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases 34 Wiki Activity

refactor: rename obikpartitionner crate to obikpartition

Browse Source 
Update Cargo manifests, dependency paths, and Rust imports across the workspace to reflect the `obikpartitionner` to `obikpartition` rename. Synchronize architecture and implementation documentation with the new module structure. Fix minor syntax issues in test assertions to ensure compilation compatibility. No behavioral or API changes are introduced.
This commit is contained in:
Eric Coissac
2026-08-20 16:41:22 +02:00
parent f9ef6b8391
commit 9379bbaad8
63 changed files with 80 additions and 80 deletions
Download Patch File Download Diff File Expand all files Collapse all files
DevDocMD/implementation/pipeline.refs.md
+4 -4
View File
@@ -3,12 +3,12 @@
## Code couvert
- `obikpartitionner/src/partition.rs` — estimation des paramètres (phase 0)
- `obikpartition/src/partition.rs` — estimation des paramètres (phase 0)
- `obiskbuilder/src/iter.rs` — scatter : filtre entropie, extraction superkmers, routage partition (phase 1)
- `obikpartitionner/src/filter.rs` — déduplication bucket-sort (phase 2)
- `obikpartitionner/src/kmer_sort.rs` — tri externe + agrégation de comptages (phase 3)
- `obikpartition/src/filter.rs` — déduplication bucket-sort (phase 2)
- `obikpartition/src/kmer_sort.rs` — tri externe + agrégation de comptages (phase 3)
- `obidebruinj/src/debruijn.rs` — graphe De Bruijn, extraction des unitigs (phase 5)
- `obikpartitionner/src/index_layer.rs` — construction MPHF + évidence (phase 6), paramètre `block_bits`
- `obikpartition/src/index_layer.rs` — construction MPHF + évidence (phase 6), paramètre `block_bits`
- `obikindex/src/index.rs` — `build_layers()`, `dereplicate_and_count()`
## Notes