Add unitig extraction command to obikdump and obikmer2

Introduces a new unitig extraction feature that reads k-mers from an index, filters them by group metadata, and partitions the computation using rayon. The implementation constructs per-partition de Bruijn graphs, merges them, computes node degrees, and writes the resulting sequences as FASTA. A corresponding CLI command is added to obikmer2 to expose this functionality with configurable filtering and progress reporting.
2026-08-26 14:40:02 +02:00
parent 768fa0183d
commit 96dfb5300b
7 changed files with 129 additions and 5 deletions
@@ -1523,6 +1523,8 @@ version = "0.1.0"
 name = "obikdump"
 version = "0.1.0"
 dependencies = [
+ "obidebruinj",
+ "obifastwrite",
 "obikfilter",
 "obikidxcache",
 "obikindex",