Add CLI progress bars and throughput metrics to partitioning

Add `indicatif` v0.17 to `obikmer` and `obikpartitionner` to instrument CLI workflows with real-time progress tracking. The changes integrate progress spinners and bars into the batch processing and parallel kmer counting loops, displaying processed base pairs, throughput rates, and elapsed time. Updates occur every 0.1s to enhance observability without modifying core partitioning logic.

src/Cargo.lock

@@ -489,6 +489,19 @@ dependencies = [
  "impl-tools 0.11.4",
 ]
 
+[[package]]
+name = "console"
+version = "0.15.11"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "054ccb5b10f9f2cbf51eb355ca1d05c2d279ce1804688d0db74b4733a5aeafd8"
+dependencies = [
+ "encode_unicode",
+ "libc",
+ "once_cell",
+ "unicode-width",
+ "windows-sys 0.59.0",
+]
+
 [[package]]
 name = "core-foundation-sys"
 version = "0.8.7"
@@ -747,6 +760,12 @@ version = "1.15.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "48c757948c5ede0e46177b7add2e67155f70e33c07fea8284df6576da70b3719"
 
+[[package]]
+name = "encode_unicode"
+version = "1.0.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "34aa73646ffb006b8f5147f3dc182bd4bcb190227ce861fc4a4844bf8e3cb2c0"
+
 [[package]]
 name = "enum-as-inner"
 version = "0.6.1"
@@ -1216,6 +1235,19 @@ dependencies = [
  "hashbrown 0.17.0",
 ]
 
+[[package]]
+name = "indicatif"
+version = "0.17.11"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "183b3088984b400f4cfac3620d5e076c84da5364016b4f49473de574b2586235"
+dependencies = [
+ "console",
+ "number_prefix",
+ "portable-atomic",
+ "unicode-width",
+ "web-time",
+]
+
 [[package]]
 name = "infer"
 version = "0.19.0"
@@ -1689,6 +1721,12 @@ dependencies = [
  "autocfg",
 ]
 
+[[package]]
+name = "number_prefix"
+version = "0.4.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "830b246a0e5f20af87141b25c173cd1b609bd7779a4617d6ec582abaf90870f3"
+
 [[package]]
 name = "obicompactvec"
 version = "0.1.0"
@@ -1723,6 +1761,7 @@ name = "obikmer"
 version = "0.1.0"
 dependencies = [
  "clap",
+ "indicatif",
  "memmap2",
  "niffler 3.0.0",
  "obidebruinj",
@@ -1748,6 +1787,7 @@ version = "0.1.0"
 dependencies = [
  "cacheline-ef",
  "epserde 0.8.0",
+ "indicatif",
  "memmap2",
  "niffler 3.0.0",
  "obicompactvec",
@@ -2934,6 +2974,12 @@ version = "1.0.24"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "e6e4313cd5fcd3dad5cafa179702e2b244f760991f45397d14d4ebf38247da75"
 
+[[package]]
+name = "unicode-width"
+version = "0.2.2"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "b4ac048d71ede7ee76d585517add45da530660ef4390e49b098733c6e897f254"
+
 [[package]]
 name = "untrusted"
 version = "0.9.0"
@@ -3111,6 +3157,16 @@ dependencies = [
  "wasm-bindgen",
 ]
 
+[[package]]
+name = "web-time"
+version = "1.1.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "5a6580f308b1fad9207618087a65c04e7a10bc77e02c8e84e9b00dd4b12fa0bb"
+dependencies = [
+ "js-sys",
+ "wasm-bindgen",
+]
+
 [[package]]
 name = "webpki-roots"
 version = "0.26.11"