(feat) Add entropy-based filtering and rolling statistics for k-mers
- Introduce lazy_static dependency - Refactor encoding: rename encode_base →encode_nuc and make it pub(crate) - Add from_raw_right/raw Right methods to Kmer for right-aligned handling - Improve error message formatting and code readability in kmod.rs tests - Replace inline entropy computation with precomputed tables (entropy_table module)—using LazyLock for static lookup arrays - Simplify EntropyFilter by removing redundant tables and delegating to new entropy_table API - Add RollingStat module for real-time kmer statistics and minimizer tracking - Reorganize modules: move iter, encoding to pub(crate), add entropy_table and rolling_stat - Update imports across obiskbuilder crate accordingly
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@@ -497,6 +497,12 @@ dependencies = [
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"libc",
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]
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[[package]]
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name = "lazy_static"
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version = "1.5.0"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "bbd2bcb4c963f2ddae06a2efc7e9f3591312473c50c6685e1f298068316e66fe"
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[[package]]
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name = "libc"
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version = "0.2.185"
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@@ -624,6 +630,7 @@ dependencies = [
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name = "obiskbuilder"
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version = "0.1.0"
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dependencies = [
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"lazy_static",
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"obikrope",
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"obikseq",
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]
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