docs: add coverage reference files and flag architectural drift
These files catalog test coverage for Rust modules across architecture, implementation, and theory sections. They track recent structural changes, flag areas prone to documentation drift, and mandate verification of key parameters and routing logic to maintain alignment with the active codebase.
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<!-- coverage sidecar — ne pas ajouter au nav mkdocs -->
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# Coverage: implementation/chunkreader.md
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## Code couvert
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- `obiread/src/chunk.rs` — SeqChunkIter, détection de frontières FASTA/FASTQ, state machines
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- `obikrope/src/lib.rs` — type Rope (Vec<Bytes>), opérations zero-copy
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## Notes
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Document stable (la stratégie de chunking rope ne devrait pas avoir changé).
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Vérifier que le split FASTA/FASTQ reste correct si de nouveaux formats ont été ajoutés.
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