docs: add coverage reference files and flag architectural drift

These files catalog test coverage for Rust modules across architecture, implementation, and theory sections. They track recent structural changes, flag areas prone to documentation drift, and mandate verification of key parameters and routing logic to maintain alignment with the active codebase.
2026-05-23 13:19:31 +02:00
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+<!-- coverage sidecar — ne pas ajouter au nav mkdocs -->
+# Coverage: theory/encoding.md
+
+## Code couvert
+
+- `obikseq/src/kmer.rs` — encodage 2 bits/base, revcomp, forme canonique
+
+## Notes
+
+Document purement théorique. Peu de risque de dérive sauf si l'encodage interne de Kmer change.
+Vérifier que la table d'encodage A=00, C=01, G=10, T=11 est toujours celle du code.