docs: expand kmer indexing, filtering, and merging documentation

Expands MkDocs navigation and documentation for evidence elimination, the merge command, and kmer filtering. Refactors kmer representation to a generic `KmerOf<L>` type with a bitwise reverse complement algorithm. Unifies MPHF construction, introduces approximate fingerprint-based indexing, and updates the pipeline, chunkreader, and storage layouts. Adds code coverage reports and clarifies architectural invariants for improved maintainability.
2026-06-04 21:27:01 +02:00
parent 9306ec1c56
commit bb7adc1154
50 changed files with 34226 additions and 1576 deletions
@@ -9,7 +9,7 @@
      
      
      
-        <link rel="prev" href="../../../implementation/persistent_bit_vec/">
+        <link rel="prev" href="../../../implementation/rebuild_filter/">
      
      
        <link rel="next" href="../../index_architecture/">
@@ -647,6 +647,34 @@
  
  
  
+    <li class="md-nav__item">
+      <a href="../../../implementation/evidence_elimination/" class="md-nav__link">
+        
+  
+  
+  <span class="md-ellipsis">
+    
+  
+    Evidence elimination (discussion)
+  
+
+    
+  </span>
+  
+  
+
+      </a>
+    </li>
+  
+
+              
+            
+              
+                
+  
+  
+  
+  
    <li class="md-nav__item">
      <a href="../../../implementation/obilayeredmap/" class="md-nav__link">
        
@@ -725,6 +753,62 @@

              
            
+              
+                
+  
+  
+  
+  
+    <li class="md-nav__item">
+      <a href="../../../implementation/merge/" class="md-nav__link">
+        
+  
+  
+  <span class="md-ellipsis">
+    
+  
+    Merge command
+  
+
+    
+  </span>
+  
+  
+
+      </a>
+    </li>
+  
+
+              
+            
+              
+                
+  
+  
+  
+  
+    <li class="md-nav__item">
+      <a href="../../../implementation/rebuild_filter/" class="md-nav__link">
+        
+  
+  
+  <span class="md-ellipsis">
+    
+  
+    Kmer filtering (rebuild/dump/unitig)
+  
+
+    
+  </span>
+  
+  
+
+      </a>
+    </li>
+  
+
+              
+            
          </ul>
        </nav>