OBIKmers/obikmer
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

docs: expand kmer indexing, filtering, and merging documentation

Browse Source 
Expands MkDocs navigation and documentation for evidence elimination, the merge command, and kmer filtering. Refactors kmer representation to a generic `KmerOf<L>` type with a bitwise reverse complement algorithm. Unifies MPHF construction, introduces approximate fingerprint-based indexing, and updates the pipeline, chunkreader, and storage layouts. Adds code coverage reports and clarifies architectural invariants for improved maintainability.
This commit is contained in:
Eric Coissac
2026-06-04 21:27:01 +02:00
parent 9306ec1c56
commit bb7adc1154
50 changed files with 34226 additions and 1576 deletions
Download Patch File Download Diff File Expand all files Collapse all files
mkdocs.yml
+1 -1
View File
@@ -49,7 +49,7 @@ nav:
- PersistentCompactIntVec: implementation/persistent_compact_int_vec.md
- PersistentBitVec: implementation/persistent_bit_vec.md
- Merge command: implementation/merge.md
- Rebuild filters: implementation/rebuild_filter.md
- Kmer filtering (rebuild/dump/unitig): implementation/rebuild_filter.md
- Architecture:
- Sequences: architecture/sequences/invariant.md
- Kmer index: architecture/index_architecture.md