feat: integrate obikseq to configure global k-mer and minimizer sizes

This change adds the `obikseq` crate as a local dependency and inserts `set_k` and `set_m` calls across index creation and command modules. By synchronizing the runtime's global k-mer and minimizer dimensions with the loaded index parameters, downstream sequence processing and partitioning operations now consistently use the correct structural constraints.
2026-06-03 11:55:11 +02:00
parent 173ac9fb42
commit bfe0cb4b82
10 changed files with 9 additions and 20 deletions
@@ -4,6 +4,7 @@ version = "0.1.0"
 edition = "2024"

 [dependencies]
+obikseq          = { path = "../obikseq" }
 obikpartitionner = { path = "../obikpartitionner" }
 obiskio          = { path = "../obiskio" }
 obisys           = { path = "../obisys" }