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feat: introduce layered MPHF indexing and partition metadata

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Refactors obikindex and obikpartitionner to delegate index construction to a new layered MPHF implementation. Adds resume-safe building with abundance filtering and count persistence, while introducing a PartitionMeta struct for JSON configuration persistence. Updates OKIError to wrap layer-specific errors, replaces single-path extraction with full path collection and logging, and registers new internal dependencies across the workspace.
This commit is contained in:
Eric Coissac
2026-05-20 21:01:16 +02:00
parent 17c9e076bd
commit c5bcb7b8fa
10 changed files with 193 additions and 229 deletions
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src/obikindex/Cargo.toml
+1 -8
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@@ -5,15 +5,8 @@ edition = "2024"
[dependencies]
obikpartitionner = { path = "../obikpartitionner" }
obikseq = { path = "../obikseq" }
obisys = { path = "../obisys" }
obiskio = { path = "../obiskio" }
obidebruinj = { path = "../obidebruinj" }
obilayeredmap = { path = "../obilayeredmap" }
obicompactvec = { path = "../obicompactvec" }
cacheline-ef = "1.1"
epserde = "0.8"
ptr_hash = "1.1"
obisys = { path = "../obisys" }
rayon = "1"
serde = { version = "1", features = ["derive"] }
serde_json = "1"