fix: resolve test race conditions, add logging, and fix CI deadlock

Re-enables the `numa` feature in CI workflows to prevent container/cgroup deadlocks while preserving validation correctness. Fixes concurrent test race conditions by replacing thread-local parameter storage with process-wide atomics and mutex locks. Integrates `tracing-subscriber` for structured logging and adds thread-ID tracking to debug worker lifecycles. Additionally bumps the crate version, updates `.gitignore`, documents experimental evolutionary distance pipelines, and refactors hardcoded test constants.
2026-08-11 23:04:06 +02:00
parent 4f6d442688
commit c95c47155e
11 changed files with 169 additions and 33 deletions
@@ -28,16 +28,8 @@ jobs:
          key: ${{ runner.os }}-cargo-v2-${{ hashFiles('src/Cargo.lock') }}
          restore-keys: ${{ runner.os }}-cargo-v2-

-      # Both `obikmer` and `obikindex` default to the `numa` feature
-      # (hwloc-based topology detection + CPU pinning), which is only useful
-      # on bare-metal multi-socket indexing hosts. Under this runner's
-      # container/cgroup setup it deadlocks at startup — confirmed live
-      # (2026-08-11): the same test binary hangs indefinitely with `numa` on
-      # and passes instantly, repeatedly, with it off, on the same
-      # container. Disable it for CI; it has nothing to do with test
-      # correctness.
      - name: Build
-        run: cargo build --release --no-default-features
+        run: cargo build --release

      - name: Test
-        run: cargo test --release --no-default-features
+        run: cargo test --release