fix: resolve test race conditions, add logging, and fix CI deadlock
Re-enables the `numa` feature in CI workflows to prevent container/cgroup deadlocks while preserving validation correctness. Fixes concurrent test race conditions by replacing thread-local parameter storage with process-wide atomics and mutex locks. Integrates `tracing-subscriber` for structured logging and adds thread-ID tracking to debug worker lifecycles. Additionally bumps the crate version, updates `.gitignore`, documents experimental evolutionary distance pipelines, and refactors hardcoded test constants.
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@@ -1711,11 +1711,12 @@ dependencies = [
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"serde_json",
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"tempfile",
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"tracing",
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"tracing-subscriber",
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]
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[[package]]
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name = "obikmer"
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version = "1.1.43"
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version = "1.1.44"
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dependencies = [
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"clap",
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"csv",
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