fix: resolve test race conditions, add logging, and fix CI deadlock
Re-enables the `numa` feature in CI workflows to prevent container/cgroup deadlocks while preserving validation correctness. Fixes concurrent test race conditions by replacing thread-local parameter storage with process-wide atomics and mutex locks. Integrates `tracing-subscriber` for structured logging and adds thread-ID tracking to debug worker lifecycles. Additionally bumps the crate version, updates `.gitignore`, documents experimental evolutionary distance pipelines, and refactors hardcoded test constants.
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@@ -24,6 +24,7 @@ hwlocality = { version = "1.0.0-alpha.11", features = ["vendored"], option
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[dev-dependencies]
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obiread = { path = "../obiread" }
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tempfile = "3"
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tracing-subscriber = { version = "0.3", features = ["fmt", "env-filter"] }
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[features]
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default = ["numa"]
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