feat: implement per-k-mer sibling counts and central neighbor generation

Introduce the siblingannex module in obicompactvec to store per-slot minorant flags and sibling counts in a memory-mapped annex file. Add a scatter-gather pipeline in obikindex to compute these values across index layers and write them to .psib files. Implement central_canonical_neighbors in obikseq for generating strand-aware k-mer variants around the middle base. Expose rolling statistics in obiskbuilder and update dependency graphs accordingly.
This commit is contained in:
Eric Coissac
2026-08-10 15:01:59 +02:00
parent 8bc6d533e5
commit ea914bb536
9 changed files with 609 additions and 1 deletions
+2 -1
View File
@@ -10,7 +10,8 @@ pub mod stream_iter;
mod scratch;
pub(crate) mod encoding;
pub(crate) mod rolling_stat;
#[allow(missing_docs)]
pub mod rolling_stat;
pub use iter::SuperKmerIter;
pub use scratch::SuperKmerScratch;