ci: improve release workflow and bump obikmer to v1.1.37

Replace inline `docker run` with explicit container lifecycle management to improve isolation and verify exit statuses. Bump `obikmer` crate version to 1.1.37. Add debug logging for sparse hit structure memory tracking, update chunk memory documentation to reflect the Findere rework, and clarify `BYTES_PER_KMER_PER_GENOME` as a pathological bound for safety tuning.
2026-07-07 19:11:50 +02:00
parent ae42a061bd
commit eea884f393
4 changed files with 58 additions and 14 deletions
@@ -104,19 +104,23 @@ jobs:

      - name: Build macOS binary
        run: |
-          docker run --rm \
-            -v "${{ github.workspace }}:/src" \
+          CID=$(docker create \
            -w /src/src \
            registry.metabarcoding.org/cibuilder/rustcrossosx:latest \
-            cargo build --release --target aarch64-apple-darwin --no-default-features
+            cargo build --release --target aarch64-apple-darwin --no-default-features)
+          docker cp . "$CID:/src"
+          docker start -a "$CID"
+          STATUS=$(docker wait "$CID")
+          mkdir -p /tmp/dist
+          docker cp "$CID:/src/src/target/aarch64-apple-darwin/release/obikmer" /tmp/dist/obikmer-macos-arm64
+          docker rm "$CID" > /dev/null
+          [ "$STATUS" -eq 0 ]

      - name: Prepare and upload artifact
        env:
          GITEA_TOKEN: ${{ secrets.GITEATOKEN }}
          RELEASE_ID: ${{ needs.create-release.outputs.release_id }}
        run: |
-          mkdir -p /tmp/dist
-          cp src/target/aarch64-apple-darwin/release/obikmer /tmp/dist/obikmer-macos-arm64
          curl -s -X POST \
            "${{ github.server_url }}/api/v1/repos/${{ github.repository }}/releases/$RELEASE_ID/assets" \
            -H "Authorization: token $GITEA_TOKEN" \