Add persistent compact integer vector and cache-line-optimized MPHF
Introduce the `obicompactvec` crate, featuring a two-tier, memory-mapped integer vector that uses a primary `u8` array with a sentinel for overflow dispatch and a sparse L1-resident index for fast random access. Implement builder and reader modules with zero-copy serialization and comprehensive test coverage. Update `obilayeredmap` to replace the default hash function with a cache-line-optimized `Mphf`, adding explicit bounds checking and duplicate-slot detection. Add documentation for both modules and update project configuration files accordingly.
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@@ -4,14 +4,15 @@ version = "0.1.0"
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edition = "2024"
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[dependencies]
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obikseq = { path = "../obikseq" }
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obiskio = { path = "../obiskio" }
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ptr_hash = "1.1"
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epserde = "0.8"
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rayon = "1"
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memmap2 = "0.9"
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serde = { version = "1", features = ["derive"] }
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serde_json = "1"
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obikseq = { path = "../obikseq" }
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obiskio = { path = "../obiskio" }
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ptr_hash = "1.1"
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cacheline-ef = "1.1"
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epserde = "0.8"
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rayon = "1"
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memmap2 = "0.9"
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serde = { version = "1", features = ["derive"] }
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serde_json = "1"
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[dev-dependencies]
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tempfile = "3"
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