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Centralize partition directory resolution and add caching design spec

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Introduce a design specification outlining performance bottlenecks in layer data access and an agreed-upon implementation direction for caching. Refactor the codebase to centralize index and layer directory path resolution within the partition object, replacing manual string joining and external helper functions with dedicated accessor methods.
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Eric Coissac
2026-08-20 15:10:57 +02:00
parent 7eaa8c2016
commit f7ebc7a1ab
19 changed files with 221 additions and 94 deletions
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mkdocs.yml
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@@ -56,6 +56,7 @@ nav:
- Select command: implementation/select.md
- obitaxonomy crate: implementation/obitaxonomy.md
- "Benchmark: query-path testing": implementation/benchmark_query_testing.md
- "Partition and layer caching (discussion)": implementation/partition_layer_cache.md
- Architecture:
- Sequences: architecture/sequences/invariant.md
- Kmer index: architecture/index_architecture.md