Commit Graph

5 Commits

Author SHA1 Message Date
Eric Coissac e7fa60a3a2 Refactor: Simplify user authentication flow
- Remove redundant validation logic in login handler
 - Consolidate session token generation into a single utility function  
- Update error handling to use consistent HTTP status codes
2026-04-28 08:38:26 +02:00
Eric Coissac 58391886a3 🔧 Replace degenerate minimizer logic with hash-based random ordering
- Add `hash` field to MmerItem for stable, randomized minimizer ordering
- Introduce hash_mMER() using mix64 with XOR seed to avoid fixed points (e.g., poly-A/T)
- Remove is_degenerate() and minimizer_worse(), simplifying comparison to hash-only
- Update push logic: compare hashes instead of canonical values with degeneracy checks
2026-04-27 20:19:43 +02:00
Eric Coissac 5e77ea4eba 🗑️ Refactor entropy and minimizer logic into RollingStat
- Remove `entropy.rs`, `minimizer.rs` and `window.rs`; consolidate logic into new module
- Introduce unified state management in RollingStat with incremental entropy tracking and canonical minimizer computation via monotone deque
- Update SuperKmerIter to use RollingStat instead of separate components, simplifying iteration and state transitions
- Add `*.fasta` to .gitignore for generated FASTA outputs
2026-04-20 16:45:57 +02:00
Eric Coissac 5fab59f92c Add target to .gitignore 2026-04-19 16:06:06 +02:00
Eric Coissac de3f9b16cf first implementation but far to be optimal 2026-04-19 12:17:16 +02:00