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Author	SHA1	Message	Date
Eric Coissac	eaf893174f	♻️ refactor(obikpartitionner): replace low-level I/O with obiskio::SKFileWriter - Replace `limits` module and raw binary I/O with a new high-level abstraction using obiskio::SKFileWriter - Remove `niffler` dependency and compression logic (Gzip/Zstd/Lz4/Bgzf) - Simplify PartitionManager to manage partitioned file writers based on kmer hashing * Uses `n_partition_bits` for bitmask-based partition selection (2^n partitions) - Add obiskio as a local dependency Note: This is likely part of aligning with unified I/O primitives in the obiskio crate.	2026-04-26 15:00:12 +02:00
Eric Coissac	de3f9b16cf	first implementation but far to be optimal	2026-04-19 12:17:16 +02:00

Author

SHA1

Message

Date

Eric Coissac

eaf893174f

♻️ refactor(obikpartitionner): replace low-level I/O with obiskio::SKFileWriter

- Replace `limits` module and raw binary I/O with a new high-level abstraction using obiskio::SKFileWriter
- Remove `niffler` dependency and compression logic (Gzip/Zstd/Lz4/Bgzf)
- Simplify PartitionManager to manage partitioned file writers based on kmer hashing
  * Uses `n_partition_bits` for bitmask-based partition selection (2^n partitions)
- Add obiskio as a local dependency
Note: This is likely part of aligning with unified I/O primitives in the obiskio crate.

2026-04-26 15:00:12 +02:00

Eric Coissac

de3f9b16cf

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

2 Commits