Merge pull request 'Push mtzqmmrlmzzx' (#34 ) from push-mtzqmmrlmzzx into main

Reviewed-on: #34
refactor: update CI toolchain setup and optimize parallel indexing
2026-06-22 08:47:24 +00:00 · 2026-06-22 10:46:24 +02:00 · 2026-06-15 16:29:24 +00:00 · 2026-06-15 18:29:04 +02:00
4 changed files with 14 additions and 9 deletions
@@ -8,13 +8,17 @@ on:
 jobs:
  build:
    runs-on: ubuntu-latest
    container: rust:latest
    defaults:
      run:
        working-directory: src
    steps:
      - uses: actions/checkout@v4
      - name: Install Rust
        run: |
          curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y --default-toolchain stable
          echo "$HOME/.cargo/bin" >> $GITHUB_PATH
      - name: Cache cargo registry
        uses: actions/cache@v4
        with:
@@ -8,13 +8,19 @@ on:
 jobs:
  build-linux-static:
    runs-on: ubuntu-latest
    container: rust:latest
    defaults:
      run:
        working-directory: src
    steps:
      - uses: actions/checkout@v4
      - name: Install Rust + musl target
        run: |
          curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y --default-toolchain stable
          echo "$HOME/.cargo/bin" >> $GITHUB_PATH
          sudo apt-get update -qq && sudo apt-get install -y -qq musl-tools
          $HOME/.cargo/bin/rustup target add x86_64-unknown-linux-musl
      - name: Cache cargo registry
        uses: actions/cache@v4
        with:
@@ -25,11 +31,6 @@ jobs:
          key: linux-musl-cargo-${{ hashFiles('src/Cargo.lock') }}
          restore-keys: linux-musl-cargo-
      - name: Install musl toolchain
        run: |
          apt-get update -qq && apt-get install -y -qq musl-tools
          rustup target add x86_64-unknown-linux-musl
      - name: Build static binary
        run: cargo build --release --target x86_64-unknown-linux-musl
@@ -1704,7 +1704,7 @@ dependencies = [
 [[package]]
 name = "obikmer"
-version = "0.1.1"
+version = "0.1.3"
 dependencies = [
 "clap",
 "csv",
@@ -1,6 +1,6 @@
 [package]
 name = "obikmer"
-version = "0.1.1"
+version = "0.1.3"
 edition = "2024"
 [[bin]]
Author	SHA1	Message	Date
coissac	c4c71dc892	Merge pull request 'Push mtzqmmrlmzzx' (#34 ) from push-mtzqmmrlmzzx into main CI / build (push) Successful in 4m34s Details Reviewed-on: #34	2026-06-22 08:47:24 +00:00
Eric Coissac	4e625afaba	refactor: update CI toolchain setup and optimize parallel indexing CI / build (push) Successful in 4m56s Details CI / build (pull_request) Successful in 4m11s Details Update CI workflows to explicitly install the Rust toolchain via rustup and configure musl targets for deterministic static builds in Docker containers. Bump obikmer dependency to 0.1.3. Refactor obicompactvec to reduce peak memory usage by computing column sizes from filesystem metadata, add atomic writes, and implement cleanup guards. Replace parallel iteration patterns in obikindex with a structured PartitionRunner pipeline for simplified error handling and progress tracking.	2026-06-22 10:46:24 +02:00
coissac	9578f991f4	Merge pull request 'Push pslsukyowzrp' (#32 ) from push-pslsukyowzrp into main Reviewed-on: #32	2026-06-15 16:29:24 +00:00
Eric Coissac	1cd7916e06	refactor: replace rayon with NUMA-aware PartitionRunner Replaces `rayon` parallel iteration across index, rebuild, reindex, and select modules with a custom `PartitionRunner`. This introduces NUMA-aware task distribution with CPU pinning and round-robin scheduling, eliminating `Arc`, `Mutex`, and atomic synchronization primitives in favor of a flat, pre-spawned worker architecture. Error handling is simplified via `.map_err()` and the `?` operator, while progress bar updates are decoupled into dedicated callbacks.	2026-06-15 18:29:04 +02:00