Merge pull request 'chore: bump obikmer to 1.2.1 and disable obikindex default features' (#69) from push-vzoxtyuuuxqn into main

Reviewed-on: #69

src/Cargo.lock

@@ -1793,7 +1793,7 @@ dependencies = [
 
 [[package]]
 name = "obikmer"
-version = "1.2.0"
+version = "1.2.1"
 dependencies = [
  "clap",
  "csv",

src/compare_sparse/Cargo.toml

@@ -8,7 +8,7 @@ name = "compare_sparse"
 path = "src/main.rs"
 
 [dependencies]
-obikindex = { path = "../obikindex" }
+obikindex = { path = "../obikindex", default-features = false }
 obicompactvec = { path = "../obicompactvec" }
 anyhow = "1"
 fastrand = "2"

src/obikmer/Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "obikmer"
-version = "1.2.0"
+version = "1.2.2"
 edition = "2024"
 
 [[bin]]

src/obikphylo/Cargo.toml

@@ -4,7 +4,7 @@ version = "0.1.0"
 edition = "2024"
 
 [dependencies]
-obikindex        = { path = "../obikindex" }
+obikindex        = { path = "../obikindex", default-features = false }
 obikseq          = { path = "../obikseq" }
 obikpartitionner = { path = "../obikpartitionner" }
 obiskio          = { path = "../obiskio" }

src/obikphylo/src/siblings/tests.rs

@@ -1108,9 +1108,8 @@ fn diag_real_index_verify_kmer_resolution() {
     
     // The k-mer with A+other (mask 0b0011 = A+C)
     let kmer_str = "AGCTAGCTATTGAGCCTGGTCCGTATGAAAC";
-    let kmer = CanonicalKmer::from_str(kmer_str, k).unwrap();
+    let kmer = canonical(kmer_str.as_bytes());
-    let rc = kmer.revcomp();
+    let rc_str = kmer_revcomp_to_string(&kmer, k);
-    let rc_str = kmer_to_string(&rc, k);
     
     println!("kmer_forward={} kmer_revcomp={}", kmer_str, rc_str);
     println!("kmer partition={}", kmer.partition(n_parts));