Merge pull request 'chore: bump obikmer to 1.2.1 and disable obikindex default features' (#69 ) from push-vzoxtyuuuxqn into main

Reviewed-on: #69
chore: bump obikmer to 1.2.1 and disable obikindex default features
2026-08-17 11:33:56 +00:00 · 2026-08-17 13:32:30 +02:00 · 2026-08-17 10:35:12 +00:00 · 2026-08-17 12:33:59 +02:00 · 2026-08-17 12:32:44 +02:00 · 2026-08-17 09:41:41 +00:00
5 changed files with 6 additions and 7 deletions
@@ -1793,7 +1793,7 @@ dependencies = [

 [[package]]
 name = "obikmer"
-version = "1.2.0"
+version = "1.2.1"
 dependencies = [
 "clap",
 "csv",
@@ -8,7 +8,7 @@ name = "compare_sparse"
 path = "src/main.rs"

 [dependencies]
-obikindex = { path = "../obikindex" }
+obikindex = { path = "../obikindex", default-features = false }
 obicompactvec = { path = "../obicompactvec" }
 anyhow = "1"
 fastrand = "2"
@@ -1,6 +1,6 @@
 [package]
 name = "obikmer"
-version = "1.2.0"
+version = "1.2.2"
 edition = "2024"

 [[bin]]
@@ -4,7 +4,7 @@ version = "0.1.0"
 edition = "2024"

 [dependencies]
-obikindex        = { path = "../obikindex" }
+obikindex        = { path = "../obikindex", default-features = false }
 obikseq          = { path = "../obikseq" }
 obikpartitionner = { path = "../obikpartitionner" }
 obiskio          = { path = "../obiskio" }
@@ -1108,9 +1108,8 @@ fn diag_real_index_verify_kmer_resolution() {
    
    // The k-mer with A+other (mask 0b0011 = A+C)
    let kmer_str = "AGCTAGCTATTGAGCCTGGTCCGTATGAAAC";
-    let kmer = CanonicalKmer::from_str(kmer_str, k).unwrap();
-    let rc = kmer.revcomp();
-    let rc_str = kmer_to_string(&rc, k);
+    let kmer = canonical(kmer_str.as_bytes());
+    let rc_str = kmer_revcomp_to_string(&kmer, k);
    
    println!("kmer_forward={} kmer_revcomp={}", kmer_str, rc_str);
    println!("kmer partition={}", kmer.partition(n_parts));
Author	SHA1	Message	Date
coissac	0f389b37f2	Merge pull request 'chore: bump obikmer to 1.2.1 and disable obikindex default features' (#69 ) from push-vzoxtyuuuxqn into main Reviewed-on: #69	2026-08-17 11:33:56 +00:00
Eric Coissac	66ab1d0947	chore: bump obikmer to 1.2.1 and disable obikindex default features Release / create-release (push) Successful in 2m25s Details ci.yml / build (pull_request) Successful in 4m34s Details Release / build-linux-x86_64 (push) Successful in 8m18s Details Release / build-macos-arm64 (push) Successful in 1m55s Details Updates the obikmer lockfile version to 1.2.1 and configures the obikindex dependency to explicitly disable default features. These are manifest and lockfile adjustments that do not modify source code or alter application behavior.	2026-08-17 13:32:30 +02:00
coissac	5e2bb393e0	Merge pull request 'Push luqxvxskktxv' (#68 ) from push-luqxvxskktxv into main Reviewed-on: #68	2026-08-17 10:35:12 +00:00
Eric Coissac	fceb523f1a	chore: disable default features for obikindex Release / create-release (push) Successful in 2m28s Details ci.yml / build (pull_request) Successful in 4m41s Details Release / build-linux-x86_64 (push) Successful in 8m23s Details Release / build-macos-arm64 (push) Failing after 2m4s Details Explicitly sets `default-features = false` for the `obikindex` dependency to ensure no default features are activated during dependency resolution and compilation.	2026-08-17 12:33:59 +02:00
Eric Coissac	700eaeaed2	test: simplify k-mer test setup for updated canonical API Adapts sibling k-mer tests to the updated canonical API by replacing string-based construction with direct byte conversion. Removes intermediate reverse complement steps and introduces a helper function to compute reverse complement strings directly from canonical k-mers, preserving existing test output while streamlining setup.	2026-08-17 12:32:44 +02:00
coissac	f1f7940277	Merge pull request 'Push zpwxxpnpktps' (#67 ) from push-zpwxxpnpktps into main Reviewed-on: #67	2026-08-17 09:41:41 +00:00