Push msotyzponsls #56

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coissac merged 2 commits from push-msotyzponsls into main 2026-07-03 11:28:50 +00:00

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coissac commented 2026-07-03 11:28:38 +00:00

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coissac added 2 commits 2026-07-03 11:28:38 +00:00

refactor(numa): replace flat runner with per-node activation channels ... 67b4e4da53

Shifts the NUMA-aware runner from a flat, round-robin model to a per-node architecture using dedicated `NodeActivation` channels. Replaces absolute deltas with relative scaling based on the previous growth step's worker count, decoupling growth from node count to fix slow ramp-up and enforce per-node fairness. Updates architecture documentation to reflect these changes and focus tuning questions on `INITIAL`/`GROWTH_DIVISOR` parameters for I/O-bound validation.

fix(bitmatrix): explicitly compute diagonal entries for self-similarity ... 2b37e8aac4

The pairwise matrix functions now explicitly calculate and overwrite diagonal entries using `f(i,i)`, replacing previous implicit symmetric mirroring or default values. Documentation has been updated to clarify that diagonals represent self-comparison weights, ensuring accurate self-similarity calculations. Additionally, the obikmer crate version has been bumped to 1.1.34.

coissac merged commit 7844239a8e into main 2026-07-03 11:28:50 +00:00

coissac deleted branch push-msotyzponsls 2026-07-03 11:28:50 +00:00

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Reference: OBIKmers/obikmer#56