Push pnxswqpxlyso #13

Merged
coissac merged 5 commits from push-pnxswqpxlyso into main 2026-06-01 12:45:46 +00:00
2 changed files with 0 additions and 29 deletions
Showing only changes of commit 8b57c91ab7 - Show all commits
-24
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@@ -181,30 +181,6 @@ fn iter_kmers_two_chunks_order() {
}
}
// ── iter_canonical_kmers ──────────────────────────────────────────────────────
#[test]
fn iter_canonical_kmers_all_canonical() {
set_k(4);
let (_dir, r) = write_read(&[b"AAAACG", b"CCCCAG"]);
for kmer in r.iter_canonical_kmers() {
// canonical of a canonical kmer is itself
assert_eq!(kmer.raw(), kmer.canonical().raw());
}
}
#[test]
fn iter_canonical_kmers_matches_iter_kmers() {
set_k(4);
let (_dir, r) = write_read(&[b"AAAACG", b"CCCCAG"]);
let canonical: Vec<CanonicalKmer> = r.iter_canonical_kmers().collect();
let raw: Vec<Kmer> = r.iter_kmers().collect();
assert_eq!(canonical.len(), raw.len());
for (ck, rk) in canonical.iter().zip(raw.iter()) {
assert_eq!(ck.raw(), rk.canonical().raw());
}
}
// ── iter_indexed_canonical_kmers ──────────────────────────────────────────────
#[test]
-5
View File
@@ -370,11 +370,6 @@ impl UnitigFileReader {
.flat_map(|(_, u)| u.into_kmers())
}
pub fn iter_canonical_kmers(&self) -> impl Iterator<Item = CanonicalKmer> + '_ {
self.iter_chunks_sequential()
.flat_map(|(_, u)| u.into_canonical_kmers())
}
pub fn iter_indexed_canonical_kmers(
&self,
) -> impl Iterator<Item = (CanonicalKmer, usize, usize)> + '_ {