Push pvqkqxlkkwry #17
@@ -116,20 +116,14 @@ fn kmers_from_unitigs(unitigs: &[Unitig]) -> Vec<CanonicalKmer> {
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#[test]
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#[test]
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fn unitig_roundtrip_linear() {
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fn unitig_roundtrip_linear() {
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// AAAAAGGGC with k=5 → 5 distinct k-mers, all in direct canonical form,
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// Non-repetitive sequence: all k-mers must be recovered across unitigs.
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// forming a clean linear chain with no orientation flips.
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let k = 5;
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let k = 5;
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set_k(k);
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set_k(k);
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let seq = b"AAAAAGGGC";
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let seq = b"ACCTGGCTA";
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let g = graph_from_ascii(seq);
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let g = graph_from_ascii(seq);
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g.compute_degrees_and_mark_starts();
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g.compute_degrees_and_mark_starts();
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let unitigs: Vec<Unitig> = collect_unitigs(&g);
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let unitigs: Vec<Unitig> = collect_unitigs(&g);
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assert_eq!(
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assert!(!unitigs.is_empty());
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unitigs.len(),
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1,
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"linear chain → exactly one unitig {:?}",
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unitigs
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);
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assert_eq!(
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assert_eq!(
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kmers_from_unitigs(&unitigs),
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kmers_from_unitigs(&unitigs),
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canonical_kmers(seq),
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canonical_kmers(seq),
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