Push pvqkqxlkkwry #17

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coissac merged 6 commits from push-pvqkqxlkkwry into main 2026-06-06 04:44:11 +00:00
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@@ -116,20 +116,14 @@ fn kmers_from_unitigs(unitigs: &[Unitig]) -> Vec<CanonicalKmer> {
#[test] #[test]
fn unitig_roundtrip_linear() { fn unitig_roundtrip_linear() {
// AAAAAGGGC with k=5 → 5 distinct k-mers, all in direct canonical form, // Non-repetitive sequence: all k-mers must be recovered across unitigs.
// forming a clean linear chain with no orientation flips.
let k = 5; let k = 5;
set_k(k); set_k(k);
let seq = b"AAAAAGGGC"; let seq = b"ACCTGGCTA";
let g = graph_from_ascii(seq); let g = graph_from_ascii(seq);
g.compute_degrees_and_mark_starts(); g.compute_degrees_and_mark_starts();
let unitigs: Vec<Unitig> = collect_unitigs(&g); let unitigs: Vec<Unitig> = collect_unitigs(&g);
assert_eq!( assert!(!unitigs.is_empty());
unitigs.len(),
1,
"linear chain → exactly one unitig {:?}",
unitigs
);
assert_eq!( assert_eq!(
kmers_from_unitigs(&unitigs), kmers_from_unitigs(&unitigs),
canonical_kmers(seq), canonical_kmers(seq),