OBIKmers/obikmer
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Push vqmnuyrkpxot #9

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coissac merged 4 commits from push-vqmnuyrkpxot into main 2026-05-26 09:05:51 +00:00
Conversation 0 Commits 4 Files Changed 24
+6 -6
3 changed files with 6 additions and 6 deletions
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Showing only changes of commit 009a328c58 - Show all commits
src/obikpartitionner/src/dump_layer.rs
+2 -2
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@@ -44,7 +44,7 @@ impl KmerPartition {
if !layer_dir.exists() { break; }
l += 1;
let mphf = MphfLayer::open(&layer_dir).map_err(olm_to_sk)?;
let reader = UnitigFileReader::open(&layer_dir.join("unitigs.bin"))?;
let reader = UnitigFileReader::open_sequential(&layer_dir.join("unitigs.bin"))?;
let counts_dir = layer_dir.join("counts");
let presence_dir = layer_dir.join("presence");
@@ -97,7 +97,7 @@ impl KmerPartition {
let layer_dir = index_dir.join(format!("layer_{layer}"));
if !layer_dir.exists() { break; }
let mphf = MphfLayer::open(&layer_dir).map_err(olm_to_sk)?;
let reader = UnitigFileReader::open(&layer_dir.join("unitigs.bin"))?;
let reader = UnitigFileReader::open_sequential(&layer_dir.join("unitigs.bin"))?;
let counts_dir = layer_dir.join("counts");
let presence_dir = layer_dir.join("presence");
src/obikpartitionner/src/merge_layer.rs
+2 -2
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@@ -195,7 +195,7 @@ impl KmerPartition {
for l in 0..src_meta.n_layers {
let unitigs_path = src_index_dir
.join(format!("layer_{l}")).join("unitigs.bin");
let reader = UnitigFileReader::open(&unitigs_path)?;
let reader = UnitigFileReader::open_sequential(&unitigs_path)?;
for (kmer, _, _) in reader.iter_indexed_canonical_kmers() {
if dst_map.query(kmer).is_none() {
g.push(kmer);
@@ -303,7 +303,7 @@ impl KmerPartition {
for l in 0..src_meta.n_layers {
let src_layer_dir = src_index_dir.join(format!("layer_{l}"));
let reader = UnitigFileReader::open(&src_layer_dir.join("unitigs.bin"))?;
let reader = UnitigFileReader::open_sequential(&src_layer_dir.join("unitigs.bin"))?;
let src_data = SrcLayerData::open(&src_layer_dir, mode)?;
for (kmer, _, _) in reader.iter_indexed_canonical_kmers() {
src/obikpartitionner/src/rebuild_layer.rs
+2 -2
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@@ -116,7 +116,7 @@ impl KmerPartition {
let unitigs_path = src_layer_dir.join("unitigs.bin");
if !unitigs_path.exists() { continue; }
let reader = UnitigFileReader::open(&unitigs_path)?;
let reader = UnitigFileReader::open_sequential(&unitigs_path)?;
let src_data = SrcLayerData::open(&src_layer_dir, mode)?;
for (kmer, _, _) in reader.iter_indexed_canonical_kmers() {
@@ -181,7 +181,7 @@ impl KmerPartition {
let unitigs_path = src_layer_dir.join("unitigs.bin");
if !unitigs_path.exists() { continue; }
let reader = UnitigFileReader::open(&unitigs_path)?;
let reader = UnitigFileReader::open_sequential(&unitigs_path)?;
let src_data = SrcLayerData::open(&src_layer_dir, mode)?;
for (kmer, _, _) in reader.iter_indexed_canonical_kmers() {