Eric Coissac
5c1584967f
The command now supports reopening existing indexes instead of failing when the output file exists. Control flow branches between opening an existing index and constructing a new one, moving configuration setup exclusively to the creation path. Directory existence is enforced upfront with proper I/O error propagation. The --force flag retains its original semantics by removing the target directory before proceeding with a fresh build.
1.2 KiB
1.2 KiB
Coverage: architecture/index_architecture.md
Code couvert
obikindex/src/layer/typed_layer.rs— Layer, trait LayerData, modes () / PersistentCompactIntMatrix / PersistentBitMatrixobikindex/src/layer/mphf_layer.rs— MphfLayer, EvidenceKind (Exact / Approx), LayerEvidence enumobikindex/src/layer/map.rs— LayeredMapobikindex/src/layer/meta.rs— LayerMeta, PartitionMetaobikindex/src/meta.rs— IndexConfig (kmer_size, n_bits, with_counts, evidence, block_bits), IndexMetaobikindex/src/index.rs— KmerIndex, build_layersobicompactvec/src/— PersistentCompactIntMatrix, PersistentBitMatrix (DataStore implementations)
Notes
FORT RISQUE DE DÉRIVE. Nombreux changements récents :
- Ajout de
EvidenceKind(Exact / Approx { b, z }) dansIndexConfigetLayerMeta - Ajout de
block_bitsdansIndexConfig LayerEvidenceenum dansmphf_layer.rsremplace l'ancienne approche monolithique- Distinction
open()vsopen_sequential()dansUnitigFileReader - Commandes
reindexetestimateajoutées Vérifier que la hiérarchie à 3 niveaux décrite est toujours exacte et que les nouveaux paramètres sont documentés.