Eric Coissac 98c14aade9 feat: centralize index configuration and add hybrid mode ...

Centralizes index configuration by storing a single `IndexMode` (`Exact`, `Approx`, or `Hybrid`) in `PartitionMeta`, eliminating per-layer metadata files. Introduces a `Hybrid` evidence mode and an `--approx` CLI flag to toggle between exact and probabilistic indexing. Refactors the build and query pipelines to dynamically dispatch based on the configured mode, deferring `.idx` generation to Pass 2 and only requiring it for Exact/Hybrid modes. Updates layer opening to load appropriate data structures, enforces strict parameter validation during merges, and clarifies performance trade-offs in documentation.

2026-05-26 15:08:29 +02:00

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chunkreader.md

refactor: update core types and add approximate evidence support

2026-05-26 10:04:25 +02:00

chunkreader.refs.md

docs: add coverage reference files and flag architectural drift

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evidence_elimination.md

docs: update architecture and storage specs for approximate index

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evidence_elimination.refs.md

docs: add coverage reference files and flag architectural drift

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kmer.md

refactor: update core types and add approximate evidence support

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kmer.refs.md

docs: add coverage reference files and flag architectural drift

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merge.md

refactor: update core types and add approximate evidence support

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merge.refs.md

docs: add coverage reference files and flag architectural drift

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mphf.md

feat: centralize index configuration and add hybrid mode

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mphf.refs.md

docs: add coverage reference files and flag architectural drift

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obilayeredmap.md

feat: centralize index configuration and add hybrid mode

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obilayeredmap.refs.md

docs: add coverage reference files and flag architectural drift

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obipipeline.md

refactor: update core types and add approximate evidence support

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obipipeline.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

persistent_bit_vec.md

docs: clarify MPHF indexing, storage layout, and distance traits

2026-05-17 15:59:10 +08:00

persistent_bit_vec.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

persistent_compact_int_vec.md

docs: clarify MPHF indexing, storage layout, and distance traits

2026-05-17 15:59:10 +08:00

persistent_compact_int_vec.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

pipeline.md

refactor: update core types and add approximate evidence support

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pipeline.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

storage.md

docs: update architecture and storage specs for approximate index

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storage.refs.md

docs: add coverage reference files and flag architectural drift

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superkmer.md

refactor: update core types and add approximate evidence support

2026-05-26 10:04:25 +02:00

superkmer.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

unitig_evidence.md

feat: centralize index configuration and add hybrid mode

2026-05-26 15:08:29 +02:00

unitig_evidence.refs.md

docs: add coverage reference files and flag architectural drift

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