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Eric Coissac 9379bbaad8 refactor: rename obikpartitionner crate to obikpartition

Update Cargo manifests, dependency paths, and Rust imports across the workspace to reflect the `obikpartitionner` to `obikpartition` rename. Synchronize architecture and implementation documentation with the new module structure. Fix minor syntax issues in test assertions to ensure compilation compatibility. No behavioral or API changes are introduced.

2026-08-20 16:41:22 +02:00

1020 B

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Coverage: implementation/pipeline.md

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obikpartition/src/partition.rs — estimation des paramètres (phase 0)
obiskbuilder/src/iter.rs — scatter : filtre entropie, extraction superkmers, routage partition (phase 1)
obikpartition/src/filter.rs — déduplication bucket-sort (phase 2)
obikpartition/src/kmer_sort.rs — tri externe + agrégation de comptages (phase 3)
obidebruinj/src/debruijn.rs — graphe De Bruijn, extraction des unitigs (phase 5)
obikpartition/src/index_layer.rs — construction MPHF + évidence (phase 6), paramètre block_bits
obikindex/src/index.rs — build_layers(), dereplicate_and_count()

Notes

RISQUE DE DÉRIVE modéré. Vérifier :

Phase 6 : la doc mentionne-t-elle le filtre d'abondance (min_ab, max_ab) ?
Phase 6 : block_bits passé à build_index_layer depuis IndexConfig
Phase 6 : dispatch exact/approx selon EvidenceKind dans build_index_layer

1020 B Raw Blame History

Coverage: implementation/pipeline.md

Code couvert

Notes

1020 B

Raw Blame History