obikmer

Files

T

Eric Coissac 0da725ffe9 refine k-mer index architecture documentation and remove obsolete spec

Introduces raw mapping and iteration APIs that bypass membership checks, clarifies variant-specific storage layouts and auto-detection logic, and documents optimized batch access patterns with caller-provided buffers. Removes the outdated obicompactvector_reflexion.md specification to consolidate architectural details into current implementation docs.

2026-08-20 13:20:29 +02:00

architecture

perf: optimize entropy computation by pre-filtering monomorphic minorants

2026-08-17 09:32:45 +02:00

css

large refactoring

2026-08-17 09:28:53 +02:00

implementation

refine k-mer index architecture documentation and remove obsolete spec

2026-08-20 13:20:29 +02:00

theory

feat(phylo): add --iqtree-min-freq to filter rare nucleotide states