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obikmer/docmd/theory
Eric Coissac 380b5a6f94 📖 Update super-kmer theory and implementation to prefer non-degenerate m-mers
- Update super-kmer definition in `kmERS.md` to specify that non-degenerate m-mers are preferred over degenerate ones (degeneracy = homopolymer).
- Refactor `superkmer.rs`: change `.canonical()` to mutate in-place and return bool.
- Add `m` field & canonical-aware minimizer position calculation to SuperKmerIter in obiskbuilder.
- Add helper functions `is_degenerate` and minimizer comparison logic to rolling_stat.rs for consistent tie-breaking.
- Minor formatting cleanup in superkmer command and chunk processing.
2026-04-20 17:50:09 +02:00
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