Eric Coissac
a63692b8c4
Updated CI workflow cache keys with a `v2` salt and `Cargo.lock` hash to prevent stale incremental compilation caches and deadlocks, while updating restore keys and documenting interrupted job state. Introduced a 3-way ordinal distance metric framework that replaces ambiguous IUPAC encoding with explicit k-mer scoring, bridging pairwise methods to character-based phylogenetics via Sankoff parsimony. Bumped the `obikmer` crate version to 1.1.42.
42 lines
1.2 KiB
YAML
42 lines
1.2 KiB
YAML
pname: CI
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on:
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pull_request:
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branches: ['main']
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jobs:
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build:
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runs-on: ubuntu-latest
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defaults:
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run:
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working-directory: src
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steps:
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- uses: actions/checkout@v4
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- name: Install Rust
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run: |
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curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y --default-toolchain stable
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echo "$HOME/.cargo/bin" >> $GITHUB_PATH
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- name: Cache cargo registry
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uses: actions/cache@v4
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with:
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path: |
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~/.cargo/registry
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~/.cargo/git
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src/target
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# v2: bump this salt to force a clean cache when a stuck/killed job
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# may have saved a corrupted incremental-compilation `src/target`
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# (observed 2026-08-11: a stale test binary deadlocked in NUMA
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# worker startup; a from-scratch rebuild of the same source fixed
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# it instantly, pointing at cache corruption rather than a source
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# bug).
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key: ${{ runner.os }}-cargo-v2-${{ hashFiles('src/Cargo.lock') }}
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restore-keys: ${{ runner.os }}-cargo-v2-
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- name: Build
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run: cargo build --release
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- name: Test
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run: cargo test --release
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